Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 BX842568.4-201ENST00000421222 227 ntBASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 AL591424.1-201ENST00000442569 1213 ntBASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 UNC93B6-202ENST00000528242 690 ntBASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 AC140113.2-201ENST00000604370 208 ntBASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
CTDP1Q9Y5B0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
CTDP1Q9Y5B0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 AC003669.1-201ENST00000334569 611 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 DDX43P3-201ENST00000441064 443 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 SIGLEC30P-201ENST00000455569 941 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 FAM197Y3-203ENST00000618346 717 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 AC009949.1-201ENST00000623048 1830 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 AC100803.2-201ENST00000562459 1963 ntBASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.32■□□□□ 0.84
CTDP1Q9Y5B0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AL353593.2-201ENST00000602529 1483 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AC087289.5-201ENST00000586076 3175 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 MIR1233-2-201ENST00000408138 82 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 MIR1233-1-201ENST00000408722 82 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 KRT18P3-201ENST00000451602 1288 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AC034105.1-201ENST00000563488 319 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 AL589182.2-201ENST00000619332 1049 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTDP1Q9Y5B0 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 AL049757.1-201ENST00000616842 1596 ntBASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CTDP1Q9Y5B0 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms