Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TDP1Q9NUW8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TDP1Q9NUW8 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TDP1Q9NUW8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TDP1Q9NUW8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TDP1Q9NUW8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TDP1Q9NUW8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 HCG4B-203ENST00000450128 991 ntBASIC18.06■□□□□ 0.48
TDP1Q9NUW8 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 AL353135.1-201ENST00000606729 504 ntBASIC18.06■□□□□ 0.48
TDP1Q9NUW8 AC079781.4-201ENST00000641908 219 ntBASIC18.06■□□□□ 0.48
TDP1Q9NUW8 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 AC104581.1-202ENST00000635932 2618 ntBASIC18.06■□□□□ 0.48
TDP1Q9NUW8 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TDP1Q9NUW8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 AC002310.6-201ENST00000624451 1377 ntBASIC18.05■□□□□ 0.48
TDP1Q9NUW8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 PTCHD3P3-201ENST00000403073 906 ntBASIC18.05■□□□□ 0.48
TDP1Q9NUW8 MCCD1P2-201ENST00000423228 335 ntBASIC18.05■□□□□ 0.48
TDP1Q9NUW8 RPS8P6-201ENST00000426177 609 ntBASIC18.05■□□□□ 0.48
TDP1Q9NUW8 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TDP1Q9NUW8 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 BCL2-203ENST00000589955 5011 ntBASIC18.04■□□□□ 0.48
TDP1Q9NUW8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 AP002414.1-201ENST00000391405 1147 ntBASIC18.04■□□□□ 0.48
TDP1Q9NUW8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 AC004967.1-201ENST00000453589 447 ntBASIC18.04■□□□□ 0.48
TDP1Q9NUW8 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 GGTLC5P-201ENST00000617623 998 ntBASIC18.04■□□□□ 0.48
TDP1Q9NUW8 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 AC134684.3-201ENST00000641758 218 ntBASIC18.04■□□□□ 0.48
TDP1Q9NUW8 AC138028.4-201ENST00000564984 1845 ntBASIC18.04■□□□□ 0.48
TDP1Q9NUW8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TDP1Q9NUW8 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms