Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 AC005829.1-201ENST00000570002 483 ntBASIC20.66■□□□□ 0.9
DDX4Q9NQI0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 AL135999.2-201ENST00000622438 1686 ntBASIC20.66■□□□□ 0.9
DDX4Q9NQI0 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DDX4Q9NQI0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 AIRN-201ENST00000601203 4374 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 AC211486.1-202ENST00000416371 468 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 ACTG1P4-201ENST00000425123 1122 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 AP006288.1-201ENST00000446065 395 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 AC211476.1-201ENST00000503899 468 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 MIR4469-201ENST00000583919 79 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 AC004877.2-201ENST00000623941 599 ntBASIC20.65■□□□□ 0.9
DDX4Q9NQI0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
DDX4Q9NQI0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
DDX4Q9NQI0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
DDX4Q9NQI0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.64■□□□□ 0.9
DDX4Q9NQI0 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 AL078644.1-201ENST00000609881 752 ntBASIC20.64■□□□□ 0.89
DDX4Q9NQI0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 AC046185.3-201ENST00000623228 1824 ntBASIC20.64■□□□□ 0.89
DDX4Q9NQI0 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DDX4Q9NQI0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms