Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRIM56Q9BRZ2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 AC022898.2-201ENST00000616822 1312 ntBASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 AC006011.2-201ENST00000621313 1158 ntBASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRIM56Q9BRZ2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 AC008687.5-201ENST00000593746 558 ntBASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 AL445228.2-201ENST00000605589 952 ntBASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 AL023806.1-201ENST00000603994 1649 ntBASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM56Q9BRZ2 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 STARP1-201ENST00000397973 869 ntBASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 KRT18P65-201ENST00000439811 1286 ntBASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 AL359075.1-203ENST00000462729 1002 ntBASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 VENTXP5-201ENST00000523979 775 ntBASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM56Q9BRZ2 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms