Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 AC108073.2-201ENST00000464002 357 ntBASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 RPS15P9-201ENST00000494093 319 ntBASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 RNA5SP416-201ENST00000516838 111 ntBASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 AC010327.4-202ENST00000591484 748 ntBASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PAAF1Q9BRP4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 LINC00982-205ENST00000420957 435 ntBASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 AC020763.4-201ENST00000623414 4170 ntBASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PAAF1Q9BRP4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
PAAF1Q9BRP4 NEFHP1-201ENST00000412845 2629 ntBASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 YBX2P1-201ENST00000394192 760 ntBASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 IGHV3-65-201ENST00000523210 341 ntBASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.7■□□□□ 0.58
PAAF1Q9BRP4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 PTCHD3P3-201ENST00000403073 906 ntBASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AC040169.1-201ENST00000565382 521 ntBASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AL353135.1-201ENST00000606729 504 ntBASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 AC008667.4-201ENST00000607370 168 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms