Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.9■□□□□ 0.3
VMP1Q96GC9 AC004263.2-201ENST00000617183 678 ntBASIC16.9■□□□□ 0.3
VMP1Q96GC9 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.9■□□□□ 0.3
VMP1Q96GC9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VMP1Q96GC9 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VMP1Q96GC9 LINC01126-201ENST00000623515 1646 ntBASIC16.89■□□□□ 0.29
VMP1Q96GC9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VMP1Q96GC9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VMP1Q96GC9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VMP1Q96GC9 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.89■□□□□ 0.29
VMP1Q96GC9 HCG4P8-203ENST00000443049 980 ntBASIC16.89■□□□□ 0.29
VMP1Q96GC9 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 GUSBP12-201ENST00000513727 720 ntBASIC16.89■□□□□ 0.29
VMP1Q96GC9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 NPAP1P7-201ENST00000613027 823 ntBASIC16.89■□□□□ 0.29
VMP1Q96GC9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VMP1Q96GC9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VMP1Q96GC9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VMP1Q96GC9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VMP1Q96GC9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 IGHV3-41-201ENST00000613121 348 ntBASIC16.88■□□□□ 0.29
VMP1Q96GC9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 AL118508.1-201ENST00000613502 2345 ntBASIC16.88■□□□□ 0.29
VMP1Q96GC9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 KRT18P1-202ENST00000452408 1331 ntBASIC16.88■□□□□ 0.29
VMP1Q96GC9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms