Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 KRT18P38-201ENST00000449496 1282 ntBASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 NTF6B-201ENST00000591913 560 ntBASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 AC010331.1-201ENST00000611423 582 ntBASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCHCR1Q8TD31 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CCHCR1Q8TD31 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 AL671277.2-201ENST00000458060 996 ntBASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 AL136038.4-201ENST00000603606 1261 ntBASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.37■□□□□ 0.53
CCHCR1Q8TD31 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms