Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 RBM17P3-201ENST00000417687 1192 ntBASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MTCL1P1-201ENST00000446207 792 ntBASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 AP001269.4-201ENST00000609611 512 ntBASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 MIR7706-201ENST00000613747 67 ntBASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 TNRC18P3-201ENST00000441896 2691 ntBASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC144BQ3MJ40 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 AC073648.2-201ENST00000510116 352 ntBASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 KRT18P58-201ENST00000527480 1120 ntBASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 AC009533.2-201ENST00000543664 586 ntBASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 AC106730.1-201ENST00000566722 1090 ntBASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 AL138831.2-201ENST00000606564 490 ntBASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 AC139530.3-201ENST00000620344 690 ntBASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC144BQ3MJ40 LINC00602-201ENST00000629776 2065 ntBASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 KRT18P13-201ENST00000400056 1290 ntBASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 HNRNPDP1-201ENST00000439535 754 ntBASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 AC139887.3-201ENST00000568585 713 ntBASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 INTS4P1-201ENST00000438455 1935 ntBASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms