Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC097374.2-201ENST00000618617 1306 ntBASIC16.92■□□□□ 0.3
COL28A1Q2UY09 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC018470.1-201ENST00000624790 3129 ntBASIC16.92■□□□□ 0.3
COL28A1Q2UY09 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 KRT8P50-201ENST00000562022 1438 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AC093512.1-201ENST00000617969 520 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AF228730.6-201ENST00000641497 218 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AC084121.3-201ENST00000641716 218 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AC105233.6-201ENST00000642093 218 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AC126763.1-201ENST00000552015 2118 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 AL133373.2-201ENST00000623187 2828 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL28A1Q2UY09 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.91■□□□□ 0.3
COL28A1Q2UY09 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 AC002310.6-201ENST00000624451 1377 ntBASIC16.9■□□□□ 0.3
COL28A1Q2UY09 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 MYLKP1-201ENST00000509077 1580 ntBASIC16.9■□□□□ 0.3
COL28A1Q2UY09 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 AC027612.4-201ENST00000605371 583 ntBASIC16.9■□□□□ 0.3
COL28A1Q2UY09 C20orf181-201ENST00000623918 480 ntBASIC16.9■□□□□ 0.3
COL28A1Q2UY09 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL28A1Q2UY09 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL28A1Q2UY09 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
COL28A1Q2UY09 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL28A1Q2UY09 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL28A1Q2UY09 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms