Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 FST-202ENST00000396947 2538 ntTSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
PCDH1Q08174 AC141586.5-201ENST00000624546 2050 ntBASIC17■□□□□ 0.31
PCDH1Q08174 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDH1Q08174 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.99■□□□□ 0.31
PCDH1Q08174 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PCDH1Q08174 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 MYCLP1-201ENST00000372451 1075 ntBASIC16.99■□□□□ 0.31
PCDH1Q08174 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDH1Q08174 PCED1CP-201ENST00000419887 785 ntBASIC16.99■□□□□ 0.31
PCDH1Q08174 AC103564.2-201ENST00000432853 1299 ntBASIC16.99■□□□□ 0.31
PCDH1Q08174 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDH1Q08174 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDH1Q08174 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDH1Q08174 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PCDH1Q08174 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDH1Q08174 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDH1Q08174 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 LYSMD4-203ENST00000378904 2122 ntBASIC16.99■□□□□ 0.31
PCDH1Q08174 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PCDH1Q08174 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH1Q08174 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 TSSC2-201ENST00000450217 709 ntBASIC16.98■□□□□ 0.31
PCDH1Q08174 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.98■□□□□ 0.31
PCDH1Q08174 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.98■□□□□ 0.31
PCDH1Q08174 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 AC009533.2-201ENST00000543664 586 ntBASIC16.98■□□□□ 0.31
PCDH1Q08174 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.98■□□□□ 0.31
PCDH1Q08174 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
PCDH1Q08174 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH1Q08174 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 AC108860.2-201ENST00000562760 2183 ntBASIC16.98■□□□□ 0.31
PCDH1Q08174 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH1Q08174 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH1Q08174 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.97■□□□□ 0.31
PCDH1Q08174 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDH1Q08174 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDH1Q08174 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PCDH1Q08174 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.97■□□□□ 0.31
PCDH1Q08174 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 ARMC10P1-201ENST00000313754 855 ntBASIC16.97■□□□□ 0.31
PCDH1Q08174 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDH1Q08174 FAM220CP-201ENST00000395253 831 ntBASIC16.97■□□□□ 0.31
PCDH1Q08174 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.97■□□□□ 0.31
PCDH1Q08174 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 AP002383.4-201ENST00000442518 975 ntBASIC16.97■□□□□ 0.31
PCDH1Q08174 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDH1Q08174 KRT18P35-201ENST00000510488 1269 ntBASIC16.97■□□□□ 0.31
PCDH1Q08174 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDH1Q08174 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.97■□□□□ 0.31
PCDH1Q08174 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.97■□□□□ 0.31
PCDH1Q08174 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDH1Q08174 AC087388.1-201ENST00000571370 1112 ntBASIC16.97■□□□□ 0.31
PCDH1Q08174 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDH1Q08174 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
PCDH1Q08174 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PCDH1Q08174 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.97■□□□□ 0.31
PCDH1Q08174 AC011467.2-201ENST00000598425 242 ntBASIC16.97■□□□□ 0.31
PCDH1Q08174 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDH1Q08174 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDH1Q08174 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms