Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 IGHV3-71-201ENST00000523324 359 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 AL033527.4-201ENST00000641026 673 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC12.48□□□□□ -0.41
COL7A1Q02388 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.48□□□□□ -0.41
COL7A1Q02388 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 RN7SL589P-201ENST00000481268 310 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
COL7A1Q02388 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC12.47□□□□□ -0.41
COL7A1Q02388 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC12.47□□□□□ -0.41
COL7A1Q02388 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
COL7A1Q02388 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.47□□□□□ -0.41
COL7A1Q02388 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.47□□□□□ -0.41
COL7A1Q02388 SLC25A39P2-201ENST00000537614 270 ntBASIC12.47□□□□□ -0.41
COL7A1Q02388 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.47□□□□□ -0.41
COL7A1Q02388 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
COL7A1Q02388 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL7A1Q02388 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
COL7A1Q02388 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.47□□□□□ -0.41
COL7A1Q02388 COX5BP2-201ENST00000392354 334 ntBASIC12.47□□□□□ -0.41
COL7A1Q02388 AC002056.1-201ENST00000395613 760 ntBASIC12.47□□□□□ -0.41
COL7A1Q02388 AC103564.2-201ENST00000432853 1299 ntBASIC12.47□□□□□ -0.41
COL7A1Q02388 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.47□□□□□ -0.41
COL7A1Q02388 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 FAM86C2P-203ENST00000528684 1004 ntBASIC12.47□□□□□ -0.41
COL7A1Q02388 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.47□□□□□ -0.41
COL7A1Q02388 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL7A1Q02388 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL7A1Q02388 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
COL7A1Q02388 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL7A1Q02388 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL7A1Q02388 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL7A1Q02388 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC12.46□□□□□ -0.41
COL7A1Q02388 AC069120.2-201ENST00000524091 540 ntBASIC12.46□□□□□ -0.41
COL7A1Q02388 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.46□□□□□ -0.41
COL7A1Q02388 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.46□□□□□ -0.41
COL7A1Q02388 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
COL7A1Q02388 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL7A1Q02388 AC022144.1-201ENST00000602255 1580 ntBASIC12.46□□□□□ -0.41
COL7A1Q02388 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.46□□□□□ -0.41
COL7A1Q02388 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL7A1Q02388 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
COL7A1Q02388 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC12.46□□□□□ -0.42
COL7A1Q02388 ACTG1P4-201ENST00000425123 1122 ntBASIC12.46□□□□□ -0.42
COL7A1Q02388 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC12.46□□□□□ -0.42
COL7A1Q02388 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL7A1Q02388 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
COL7A1Q02388 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.46□□□□□ -0.42
COL7A1Q02388 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC12.46□□□□□ -0.42
COL7A1Q02388 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
COL7A1Q02388 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL7A1Q02388 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.46□□□□□ -0.42
COL7A1Q02388 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL7A1Q02388 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.46□□□□□ -0.42
COL7A1Q02388 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL7A1Q02388 AC005332.7-201ENST00000614046 2005 ntBASIC12.46□□□□□ -0.42
COL7A1Q02388 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL7A1Q02388 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL7A1Q02388 PI4KAP1-204ENST00000612579 1703 ntBASIC12.46□□□□□ -0.42
COL7A1Q02388 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC12.46□□□□□ -0.42
COL7A1Q02388 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.45□□□□□ -0.42
COL7A1Q02388 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 AC005237.2-201ENST00000434368 219 ntBASIC12.45□□□□□ -0.42
COL7A1Q02388 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
COL7A1Q02388 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.45□□□□□ -0.42
COL7A1Q02388 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms