Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA3P55318 AC103702.1-201ENST00000548801 2630 ntBASIC13.27□□□□□ -0.29
FOXA3P55318 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 AC022898.2-201ENST00000616822 1312 ntBASIC13.27□□□□□ -0.29
FOXA3P55318 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA3P55318 AC036111.1-201ENST00000533973 1582 ntBASIC13.27□□□□□ -0.29
FOXA3P55318 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA3P55318 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA3P55318 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA3P55318 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
FOXA3P55318 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA3P55318 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA3P55318 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 GUSBP6-202ENST00000438529 1198 ntBASIC13.26□□□□□ -0.29
FOXA3P55318 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC13.26□□□□□ -0.29
FOXA3P55318 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 AC098934.4-201ENST00000564127 592 ntBASIC13.26□□□□□ -0.29
FOXA3P55318 NORAD-201ENST00000565493 5339 ntBASIC13.26□□□□□ -0.29
FOXA3P55318 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 WT1-AS_3.1-201ENST00000613262 234 ntBASIC13.26□□□□□ -0.29
FOXA3P55318 ANKRD20A6P-201ENST00000618763 204 ntBASIC13.26□□□□□ -0.29
FOXA3P55318 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.26□□□□□ -0.29
FOXA3P55318 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
FOXA3P55318 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA3P55318 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA3P55318 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 AL603756.1-201ENST00000606511 2163 ntBASIC13.25□□□□□ -0.29
FOXA3P55318 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 AC100803.2-201ENST00000562459 1963 ntBASIC13.25□□□□□ -0.29
FOXA3P55318 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA3P55318 KRT8P7-201ENST00000533003 1432 ntBASIC13.25□□□□□ -0.29
FOXA3P55318 HOXB1-202ENST00000577092 1414 ntBASIC13.25□□□□□ -0.29
FOXA3P55318 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA3P55318 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA3P55318 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
FOXA3P55318 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms