Protein–RNA interactions for Protein: P51800

CLCNKA, Chloride channel protein ClC-Ka, humanhuman

Predictions only

Length 687 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKAP51800 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCNKAP51800 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.28■□□□□ 0.36
CLCNKAP51800 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.28■□□□□ 0.36
CLCNKAP51800 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLCNKAP51800 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
CLCNKAP51800 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.28■□□□□ 0.36
CLCNKAP51800 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 KRT18P67-201ENST00000432816 1264 ntBASIC17.28■□□□□ 0.36
CLCNKAP51800 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.28■□□□□ 0.36
CLCNKAP51800 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.28■□□□□ 0.36
CLCNKAP51800 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.28■□□□□ 0.36
CLCNKAP51800 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.28■□□□□ 0.36
CLCNKAP51800 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.28■□□□□ 0.36
CLCNKAP51800 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCNKAP51800 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.28■□□□□ 0.36
CLCNKAP51800 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CLCNKAP51800 AL356309.3-201ENST00000624132 1934 ntBASIC17.27■□□□□ 0.36
CLCNKAP51800 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CLCNKAP51800 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.27■□□□□ 0.36
CLCNKAP51800 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CLCNKAP51800 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CLCNKAP51800 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCNKAP51800 NOC2LP1-202ENST00000452600 2235 ntBASIC17.27■□□□□ 0.36
CLCNKAP51800 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 AC018470.1-201ENST00000624790 3129 ntBASIC17.27■□□□□ 0.36
CLCNKAP51800 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCNKAP51800 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CLCNKAP51800 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCNKAP51800 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCNKAP51800 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCNKAP51800 SIGLEC16-201ENST00000599858 1437 ntBASIC17.27■□□□□ 0.35
CLCNKAP51800 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.27■□□□□ 0.35
CLCNKAP51800 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLCNKAP51800 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.27■□□□□ 0.35
CLCNKAP51800 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.27■□□□□ 0.35
CLCNKAP51800 AL049757.1-201ENST00000616842 1596 ntBASIC17.27■□□□□ 0.35
CLCNKAP51800 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLCNKAP51800 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.26■□□□□ 0.35
CLCNKAP51800 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
CLCNKAP51800 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLCNKAP51800 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CLCNKAP51800 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.26■□□□□ 0.35
CLCNKAP51800 AC012317.2-201ENST00000623305 2251 ntBASIC17.26■□□□□ 0.35
CLCNKAP51800 AC079776.2-201ENST00000641154 1609 ntBASIC17.26■□□□□ 0.35
CLCNKAP51800 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CLCNKAP51800 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CLCNKAP51800 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.26■□□□□ 0.35
CLCNKAP51800 MRPL3P1-201ENST00000400109 1033 ntBASIC17.26■□□□□ 0.35
CLCNKAP51800 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.26■□□□□ 0.35
CLCNKAP51800 AC018712.1-201ENST00000455767 687 ntBASIC17.26■□□□□ 0.35
CLCNKAP51800 AF186996.4-201ENST00000467186 377 ntBASIC17.26■□□□□ 0.35
CLCNKAP51800 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.26■□□□□ 0.35
CLCNKAP51800 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.26■□□□□ 0.35
CLCNKAP51800 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CLCNKAP51800 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CLCNKAP51800 AC019129.2-201ENST00000609837 1235 ntBASIC17.26■□□□□ 0.35
CLCNKAP51800 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CLCNKAP51800 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CLCNKAP51800 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CLCNKAP51800 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCNKAP51800 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCNKAP51800 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCNKAP51800 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCNKAP51800 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCNKAP51800 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCNKAP51800 AC005104.2-201ENST00000427818 678 ntBASIC17.25■□□□□ 0.35
CLCNKAP51800 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms