Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
RFC3P40938 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.13■□□□□ 0.17
RFC3P40938 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 BX005266.1-201ENST00000473402 457 ntBASIC16.13■□□□□ 0.17
RFC3P40938 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.13■□□□□ 0.17
RFC3P40938 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.13■□□□□ 0.17
RFC3P40938 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.13■□□□□ 0.17
RFC3P40938 NKAPP1-205ENST00000585790 367 ntBASIC16.13■□□□□ 0.17
RFC3P40938 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
RFC3P40938 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 AC004817.3-201ENST00000602957 2129 ntBASIC16.13■□□□□ 0.17
RFC3P40938 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 AL139384.1-201ENST00000612143 3047 ntBASIC16.13■□□□□ 0.17
RFC3P40938 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 AC139713.2-201ENST00000641328 2723 ntBASIC16.12■□□□□ 0.17
RFC3P40938 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 AL390961.4-201ENST00000623958 2535 ntBASIC16.12■□□□□ 0.17
RFC3P40938 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
RFC3P40938 AC090164.3-201ENST00000610780 2143 ntBASIC16.12■□□□□ 0.17
RFC3P40938 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RFC3P40938 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.12■□□□□ 0.17
RFC3P40938 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.12■□□□□ 0.17
RFC3P40938 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
RFC3P40938 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.12■□□□□ 0.17
RFC3P40938 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RFC3P40938 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
RFC3P40938 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.12■□□□□ 0.17
RFC3P40938 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
RFC3P40938 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFC3P40938 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFC3P40938 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.11■□□□□ 0.17
RFC3P40938 PRORSD1P-202ENST00000563365 2154 ntBASIC16.11■□□□□ 0.17
RFC3P40938 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.11■□□□□ 0.17
RFC3P40938 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RFC3P40938 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFC3P40938 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFC3P40938 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFC3P40938 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RFC3P40938 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.11■□□□□ 0.17
RFC3P40938 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.11■□□□□ 0.17
RFC3P40938 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.11■□□□□ 0.17
RFC3P40938 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFC3P40938 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.11■□□□□ 0.17
RFC3P40938 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.11■□□□□ 0.17
RFC3P40938 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFC3P40938 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.11■□□□□ 0.17
RFC3P40938 MIR940-201ENST00000401276 94 ntBASIC16.11■□□□□ 0.17
RFC3P40938 AC096633.1-201ENST00000422446 749 ntBASIC16.11■□□□□ 0.17
RFC3P40938 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms