Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.2■□□□□ 0.98
BRCA1P38398 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BRCA1P38398 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
BRCA1P38398 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.2■□□□□ 0.98
BRCA1P38398 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.2■□□□□ 0.98
BRCA1P38398 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.2■□□□□ 0.98
BRCA1P38398 UXT-AS1-201ENST00000590504 1525 ntBASIC21.19■□□□□ 0.98
BRCA1P38398 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRCA1P38398 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRCA1P38398 ARSEP1-201ENST00000420443 635 ntBASIC21.19■□□□□ 0.98
BRCA1P38398 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.19■□□□□ 0.98
BRCA1P38398 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC21.19■□□□□ 0.98
BRCA1P38398 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.19■□□□□ 0.98
BRCA1P38398 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC21.19■□□□□ 0.98
BRCA1P38398 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRCA1P38398 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BRCA1P38398 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRCA1P38398 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC21.18■□□□□ 0.98
BRCA1P38398 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
BRCA1P38398 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
BRCA1P38398 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.18■□□□□ 0.98
BRCA1P38398 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 AL161645.1-201ENST00000622716 1255 ntBASIC21.18■□□□□ 0.98
BRCA1P38398 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
BRCA1P38398 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 MIR1909-201ENST00000411312 80 ntBASIC21.18■□□□□ 0.98
BRCA1P38398 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC21.18■□□□□ 0.98
BRCA1P38398 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.18■□□□□ 0.98
BRCA1P38398 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRCA1P38398 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.18■□□□□ 0.98
BRCA1P38398 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
BRCA1P38398 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
BRCA1P38398 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
BRCA1P38398 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
BRCA1P38398 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC21.17■□□□□ 0.98
BRCA1P38398 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 KRT8P23-201ENST00000560090 1207 ntBASIC21.17■□□□□ 0.98
BRCA1P38398 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
BRCA1P38398 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC21.17■□□□□ 0.98
BRCA1P38398 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.17■□□□□ 0.98
BRCA1P38398 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
BRCA1P38398 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.17■□□□□ 0.98
BRCA1P38398 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRCA1P38398 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.16■□□□□ 0.98
BRCA1P38398 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC21.16■□□□□ 0.98
BRCA1P38398 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.16■□□□□ 0.98
BRCA1P38398 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC21.16■□□□□ 0.98
BRCA1P38398 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.16■□□□□ 0.98
BRCA1P38398 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 ACA64.2-201ENST00000459014 129 ntBASIC21.16■□□□□ 0.98
BRCA1P38398 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.16■□□□□ 0.98
BRCA1P38398 WASH4P-201ENST00000564273 1246 ntBASIC21.16■□□□□ 0.98
BRCA1P38398 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC21.16■□□□□ 0.98
BRCA1P38398 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.16■□□□□ 0.98
BRCA1P38398 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BRCA1P38398 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 WASH6P-202ENST00000359512 1437 ntBASIC21.15■□□□□ 0.98
BRCA1P38398 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
BRCA1P38398 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.15■□□□□ 0.98
BRCA1P38398 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.15■□□□□ 0.98
BRCA1P38398 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.15■□□□□ 0.98
BRCA1P38398 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.15■□□□□ 0.98
BRCA1P38398 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.15■□□□□ 0.98
BRCA1P38398 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms