Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.6■□□□□ 0.89
SCN4AP35499 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.6■□□□□ 0.89
SCN4AP35499 HILS1-202ENST00000545329 423 ntBASIC20.6■□□□□ 0.89
SCN4AP35499 LINC01225-203ENST00000563550 1244 ntBASIC20.6■□□□□ 0.89
SCN4AP35499 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.6■□□□□ 0.89
SCN4AP35499 AC116407.2-201ENST00000613639 860 ntBASIC20.6■□□□□ 0.89
SCN4AP35499 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.6■□□□□ 0.89
SCN4AP35499 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
SCN4AP35499 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
SCN4AP35499 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.6■□□□□ 0.89
SCN4AP35499 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.6■□□□□ 0.89
SCN4AP35499 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
SCN4AP35499 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.6■□□□□ 0.89
SCN4AP35499 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.6■□□□□ 0.89
SCN4AP35499 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.6■□□□□ 0.89
SCN4AP35499 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SCN4AP35499 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN4AP35499 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SCN4AP35499 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN4AP35499 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN4AP35499 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
SCN4AP35499 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.59■□□□□ 0.89
SCN4AP35499 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN4AP35499 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN4AP35499 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN4AP35499 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN4AP35499 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.58■□□□□ 0.89
SCN4AP35499 AC009949.1-201ENST00000623048 1830 ntBASIC20.58■□□□□ 0.89
SCN4AP35499 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.58■□□□□ 0.89
SCN4AP35499 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN4AP35499 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.58■□□□□ 0.89
SCN4AP35499 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.58■□□□□ 0.89
SCN4AP35499 AL132655.2-201ENST00000596276 594 ntBASIC20.58■□□□□ 0.89
SCN4AP35499 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
SCN4AP35499 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN4AP35499 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SCN4AP35499 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.58■□□□□ 0.89
SCN4AP35499 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SCN4AP35499 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SCN4AP35499 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN4AP35499 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN4AP35499 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.57■□□□□ 0.88
SCN4AP35499 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.57■□□□□ 0.88
SCN4AP35499 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN4AP35499 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.57■□□□□ 0.88
SCN4AP35499 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN4AP35499 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.57■□□□□ 0.88
SCN4AP35499 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.57■□□□□ 0.88
SCN4AP35499 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN4AP35499 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.57■□□□□ 0.88
SCN4AP35499 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SCN4AP35499 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN4AP35499 AC245100.3-201ENST00000441281 285 ntBASIC20.57■□□□□ 0.88
SCN4AP35499 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.57■□□□□ 0.88
SCN4AP35499 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 AC073592.8-201ENST00000624126 511 ntBASIC20.57■□□□□ 0.88
SCN4AP35499 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN4AP35499 AC093677.2-201ENST00000600169 1863 ntBASIC20.57■□□□□ 0.88
SCN4AP35499 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SCN4AP35499 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN4AP35499 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.56■□□□□ 0.88
SCN4AP35499 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.56■□□□□ 0.88
SCN4AP35499 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.56■□□□□ 0.88
SCN4AP35499 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms