Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.15■□□□□ 0.5
COL6A3P12111 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.15■□□□□ 0.5
COL6A3P12111 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL6A3P12111 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.14■□□□□ 0.5
COL6A3P12111 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.14■□□□□ 0.5
COL6A3P12111 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 WASH4P-201ENST00000564273 1246 ntBASIC18.14■□□□□ 0.49
COL6A3P12111 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
COL6A3P12111 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL6A3P12111 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 AC006538.1-201ENST00000567905 1585 ntBASIC18.14■□□□□ 0.49
COL6A3P12111 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A3P12111 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A3P12111 HNRNPUP1-201ENST00000554987 333 ntBASIC18.14■□□□□ 0.49
COL6A3P12111 RARRES2P8-201ENST00000566335 367 ntBASIC18.14■□□□□ 0.49
COL6A3P12111 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A3P12111 DFFBP1-201ENST00000433250 979 ntBASIC18.14■□□□□ 0.49
COL6A3P12111 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A3P12111 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A3P12111 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A3P12111 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A3P12111 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 TCF3P1-201ENST00000423021 1937 ntBASIC18.13■□□□□ 0.49
COL6A3P12111 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A3P12111 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A3P12111 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A3P12111 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A3P12111 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
COL6A3P12111 AC004790.1-201ENST00000612686 536 ntBASIC18.13■□□□□ 0.49
COL6A3P12111 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 AC007952.6-201ENST00000573168 2673 ntBASIC18.13■□□□□ 0.49
COL6A3P12111 AC003957.1-201ENST00000625108 2673 ntBASIC18.13■□□□□ 0.49
COL6A3P12111 AC104457.1-201ENST00000401024 814 ntBASIC18.13■□□□□ 0.49
COL6A3P12111 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A3P12111 ALG1L8P-201ENST00000533887 760 ntBASIC18.13■□□□□ 0.49
COL6A3P12111 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL6A3P12111 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
COL6A3P12111 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A3P12111 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.12■□□□□ 0.49
COL6A3P12111 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.12■□□□□ 0.49
COL6A3P12111 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A3P12111 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A3P12111 AC008738.7-201ENST00000609744 511 ntBASIC18.12■□□□□ 0.49
COL6A3P12111 AL023806.1-201ENST00000603994 1649 ntBASIC18.12■□□□□ 0.49
COL6A3P12111 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL6A3P12111 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL6A3P12111 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL6A3P12111 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.12■□□□□ 0.49
COL6A3P12111 LBH-202ENST00000401506 485 ntTSL 3 BASIC18.12■□□□□ 0.49
COL6A3P12111 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL6A3P12111 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.12■□□□□ 0.49
COL6A3P12111 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.12■□□□□ 0.49
COL6A3P12111 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A3P12111 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms