Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.22■■□□□ 1.31
CSB-PGBD3P0DP91 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 BCRP1-201ENST00000444246 691 ntBASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 DAD1-205ENST00000543337 501 ntTSL 3 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 LSM12-202ENST00000585388 942 ntTSL 3 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CSB-PGBD3P0DP91 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 MED16-214ENST00000617672 554 ntTSL 5 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CSB-PGBD3P0DP91 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 DDX43P3-201ENST00000441064 443 ntBASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 AL096865.1-201ENST00000606796 927 ntBASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSB-PGBD3P0DP91 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC23.18■■□□□ 1.3
CSB-PGBD3P0DP91 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms