Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RB1P06400 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.52■□□□□ 0.55
RB1P06400 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
RB1P06400 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RB1P06400 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
RB1P06400 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RB1P06400 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
RB1P06400 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.52■□□□□ 0.55
RB1P06400 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
RB1P06400 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
RB1P06400 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 AC002056.1-201ENST00000395613 760 ntBASIC18.51■□□□□ 0.55
RB1P06400 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
RB1P06400 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.51■□□□□ 0.55
RB1P06400 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.51■□□□□ 0.55
RB1P06400 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.51■□□□□ 0.55
RB1P06400 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.51■□□□□ 0.55
RB1P06400 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.51■□□□□ 0.55
RB1P06400 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RB1P06400 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.5■□□□□ 0.55
RB1P06400 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.5■□□□□ 0.55
RB1P06400 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.5■□□□□ 0.55
RB1P06400 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.5■□□□□ 0.55
RB1P06400 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.5■□□□□ 0.55
RB1P06400 FAM86C2P-203ENST00000528684 1004 ntBASIC18.5■□□□□ 0.55
RB1P06400 AC190387.1-201ENST00000551683 408 ntBASIC18.5■□□□□ 0.55
RB1P06400 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.5■□□□□ 0.55
RB1P06400 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.5■□□□□ 0.55
RB1P06400 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.5■□□□□ 0.55
RB1P06400 AJ011932.1-201ENST00000621707 465 ntBASIC18.5■□□□□ 0.55
RB1P06400 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.5■□□□□ 0.55
RB1P06400 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
RB1P06400 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
RB1P06400 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.5■□□□□ 0.55
RB1P06400 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 AC006116.8-202ENST00000587620 1550 ntBASIC18.5■□□□□ 0.55
RB1P06400 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
RB1P06400 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RB1P06400 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
RB1P06400 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
RB1P06400 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
RB1P06400 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.49■□□□□ 0.55
RB1P06400 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 AL513480.1-201ENST00000451731 511 ntBASIC18.49■□□□□ 0.55
RB1P06400 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.49■□□□□ 0.55
RB1P06400 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
RB1P06400 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.49■□□□□ 0.55
RB1P06400 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.49■□□□□ 0.55
RB1P06400 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.49■□□□□ 0.55
RB1P06400 AC009093.7-201ENST00000623853 1223 ntBASIC18.49■□□□□ 0.55
RB1P06400 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
RB1P06400 AL096828.2-201ENST00000567259 1965 ntBASIC18.49■□□□□ 0.55
RB1P06400 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.49■□□□□ 0.55
RB1P06400 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.49■□□□□ 0.55
RB1P06400 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.49■□□□□ 0.55
RB1P06400 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RB1P06400 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RB1P06400 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RB1P06400 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RB1P06400 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RB1P06400 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms