Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
APOEP02649 TP73-AS1-210ENST00000637775 1455 ntBASIC18.48■□□□□ 0.55
APOEP02649 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
APOEP02649 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.48■□□□□ 0.55
APOEP02649 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.48■□□□□ 0.55
APOEP02649 LINC01711-201ENST00000598340 967 ntBASIC18.48■□□□□ 0.55
APOEP02649 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.48■□□□□ 0.55
APOEP02649 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.48■□□□□ 0.55
APOEP02649 AC114341.1-201ENST00000618070 349 ntBASIC18.48■□□□□ 0.55
APOEP02649 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.48■□□□□ 0.55
APOEP02649 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.47■□□□□ 0.55
APOEP02649 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
APOEP02649 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
APOEP02649 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 TSPY19P-201ENST00000418461 509 ntBASIC18.47■□□□□ 0.55
APOEP02649 AC096633.1-201ENST00000422446 749 ntBASIC18.47■□□□□ 0.55
APOEP02649 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.47■□□□□ 0.55
APOEP02649 TSPY18P-201ENST00000441642 509 ntBASIC18.47■□□□□ 0.55
APOEP02649 KRT16P4-201ENST00000453883 522 ntBASIC18.47■□□□□ 0.55
APOEP02649 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.47■□□□□ 0.55
APOEP02649 KRT126P-201ENST00000549467 1181 ntBASIC18.47■□□□□ 0.55
APOEP02649 AC091304.2-201ENST00000564639 760 ntBASIC18.47■□□□□ 0.55
APOEP02649 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.47■□□□□ 0.55
APOEP02649 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
APOEP02649 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.47■□□□□ 0.55
APOEP02649 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.47■□□□□ 0.55
APOEP02649 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
APOEP02649 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.46■□□□□ 0.55
APOEP02649 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.46■□□□□ 0.55
APOEP02649 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
APOEP02649 AL450487.1-201ENST00000426799 995 ntBASIC18.46■□□□□ 0.55
APOEP02649 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.46■□□□□ 0.55
APOEP02649 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 KRT18P31-201ENST00000506277 1292 ntBASIC18.46■□□□□ 0.55
APOEP02649 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.46■□□□□ 0.55
APOEP02649 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.46■□□□□ 0.55
APOEP02649 AC111152.3-201ENST00000569699 673 ntBASIC18.46■□□□□ 0.55
APOEP02649 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.46■□□□□ 0.55
APOEP02649 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.46■□□□□ 0.55
APOEP02649 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
APOEP02649 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
APOEP02649 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
APOEP02649 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
APOEP02649 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
APOEP02649 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
APOEP02649 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms