Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LDLRP01130 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.06■□□□□ 0.32
LDLRP01130 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.06■□□□□ 0.32
LDLRP01130 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.06■□□□□ 0.32
LDLRP01130 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.06■□□□□ 0.32
LDLRP01130 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 SPDYE15P-201ENST00000424157 909 ntBASIC17.06■□□□□ 0.32
LDLRP01130 UNC93B7-201ENST00000509439 705 ntBASIC17.06■□□□□ 0.32
LDLRP01130 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
LDLRP01130 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LDLRP01130 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
LDLRP01130 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LDLRP01130 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.06■□□□□ 0.32
LDLRP01130 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.06■□□□□ 0.32
LDLRP01130 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.06■□□□□ 0.32
LDLRP01130 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.06■□□□□ 0.32
LDLRP01130 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDLRP01130 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.05■□□□□ 0.32
LDLRP01130 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.05■□□□□ 0.32
LDLRP01130 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.05■□□□□ 0.32
LDLRP01130 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
LDLRP01130 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.05■□□□□ 0.32
LDLRP01130 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.05■□□□□ 0.32
LDLRP01130 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LDLRP01130 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LDLRP01130 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDLRP01130 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.05■□□□□ 0.32
LDLRP01130 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LDLRP01130 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 AL109659.2-201ENST00000606809 1674 ntBASIC17.04■□□□□ 0.32
LDLRP01130 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.04■□□□□ 0.32
LDLRP01130 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.04■□□□□ 0.32
LDLRP01130 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.04■□□□□ 0.32
LDLRP01130 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.04■□□□□ 0.32
LDLRP01130 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LDLRP01130 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms