Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 REEP4-207ENST00000523293 913 ntTSL 3 BASIC29.82■■■□□ 2.36
CUX2O14529 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CUX2O14529 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC29.82■■■□□ 2.36
CUX2O14529 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC29.82■■■□□ 2.36
CUX2O14529 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
CUX2O14529 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
CUX2O14529 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
CUX2O14529 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
CUX2O14529 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC29.81■■■□□ 2.36
CUX2O14529 MPV17-208ENST00000405076 603 ntTSL 5 BASIC29.81■■■□□ 2.36
CUX2O14529 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX2O14529 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC29.81■■■□□ 2.36
CUX2O14529 RPL28-206ENST00000558752 671 ntTSL 3 BASIC29.81■■■□□ 2.36
CUX2O14529 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
CUX2O14529 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CUX2O14529 AC129492.6-201ENST00000611383 1305 ntBASIC29.81■■■□□ 2.36
CUX2O14529 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC29.81■■■□□ 2.36
CUX2O14529 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX2O14529 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CUX2O14529 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
CUX2O14529 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC29.8■■■□□ 2.36
CUX2O14529 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC29.8■■■□□ 2.36
CUX2O14529 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC29.8■■■□□ 2.36
CUX2O14529 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC29.8■■■□□ 2.36
CUX2O14529 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
CUX2O14529 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC29.8■■■□□ 2.36
CUX2O14529 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC29.8■■■□□ 2.36
CUX2O14529 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CUX2O14529 AP006294.1-201ENST00000415407 339 ntBASIC29.8■■■□□ 2.36
CUX2O14529 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC29.8■■■□□ 2.36
CUX2O14529 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC29.8■■■□□ 2.36
CUX2O14529 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
CUX2O14529 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC29.79■■■□□ 2.36
CUX2O14529 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
CUX2O14529 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC29.79■■■□□ 2.36
CUX2O14529 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC29.79■■■□□ 2.36
CUX2O14529 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC29.79■■■□□ 2.36
CUX2O14529 LINC01225-203ENST00000563550 1244 ntBASIC29.79■■■□□ 2.36
CUX2O14529 ARL16-210ENST00000574938 751 ntTSL 2 BASIC29.79■■■□□ 2.36
CUX2O14529 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC29.79■■■□□ 2.36
CUX2O14529 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CUX2O14529 GNAS-203ENST00000306120 1878 ntBASIC29.78■■■□□ 2.36
CUX2O14529 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC29.78■■■□□ 2.36
CUX2O14529 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC29.78■■■□□ 2.36
CUX2O14529 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
CUX2O14529 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
CUX2O14529 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 MIR4538-201ENST00000581377 78 ntBASIC29.78■■■□□ 2.36
CUX2O14529 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC29.78■■■□□ 2.36
CUX2O14529 COQ4-205ENST00000609948 956 ntTSL 2 BASIC29.78■■■□□ 2.36
CUX2O14529 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
CUX2O14529 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
CUX2O14529 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 CD74-212ENST00000524315 584 ntTSL 5 BASIC29.77■■■□□ 2.36
CUX2O14529 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC29.77■■■□□ 2.36
CUX2O14529 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC29.77■■■□□ 2.36
CUX2O14529 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CUX2O14529 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CUX2O14529 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
CUX2O14529 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC29.76■■■□□ 2.35
CUX2O14529 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC29.76■■■□□ 2.35
CUX2O14529 THTPA-204ENST00000554970 569 ntTSL 4 BASIC29.76■■■□□ 2.35
CUX2O14529 THTPA-206ENST00000556015 535 ntTSL 3 BASIC29.76■■■□□ 2.35
CUX2O14529 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
CUX2O14529 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC29.76■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms