Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 AC092647.4-201ENST00000457211 535 ntBASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 AL139327.4-201ENST00000612362 153 ntBASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMCH1Q9UPQ0 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 COX5BP2-201ENST00000392354 334 ntBASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 AC063952.2-201ENST00000498792 1227 ntBASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 LINC01023-201ENST00000606054 436 ntBASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMCH1Q9UPQ0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMCH1Q9UPQ0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMCH1Q9UPQ0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMCH1Q9UPQ0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIMCH1Q9UPQ0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMCH1Q9UPQ0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 AC002558.1-201ENST00000488906 803 ntBASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 AC083849.1-201ENST00000615227 514 ntBASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
LIMCH1Q9UPQ0 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 NKILA-202ENST00000614771 2598 ntBASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 AC116353.5-201ENST00000638148 1699 ntBASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
LIMCH1Q9UPQ0 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMCH1Q9UPQ0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms