Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
COL17A1Q9UMD9 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 AKAP8P1-201ENST00000434743 1349 ntBASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 CD81-202ENST00000381036 880 ntTSL 3 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 SPDYE7P-202ENST00000420373 878 ntBASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 ACA64.2-201ENST00000459014 129 ntBASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 SLC25A6P2-201ENST00000497974 877 ntBASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 Six3os1_5.1-201ENST00000611000 271 ntBASIC26.42■■□□□ 1.82
COL17A1Q9UMD9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 AC009336.1-201ENST00000608941 1553 ntBASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 GPER1-207ENST00000619052 571 ntTSL 2 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC26.41■■□□□ 1.82
COL17A1Q9UMD9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 MIR6080-201ENST00000617359 66 ntBASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 AC100757.3-201ENST00000622361 1406 ntBASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL17A1Q9UMD9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 GIMAP3P-201ENST00000495150 836 ntBASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 AC017083.2-201ENST00000608069 979 ntBASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 AL161938.1-201ENST00000569833 2180 ntBASIC26.39■■□□□ 1.82
COL17A1Q9UMD9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC26.39■■□□□ 1.81
COL17A1Q9UMD9 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC26.38■■□□□ 1.81
COL17A1Q9UMD9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms