Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.24□□□□□ -0.29
LINC00477Q96M19 AC012313.1-201ENST00000593393 3059 ntBASIC13.24□□□□□ -0.29
LINC00477Q96M19 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 ATP5G1P1-201ENST00000448724 379 ntBASIC13.24□□□□□ -0.29
LINC00477Q96M19 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 ANKRD20A8P-203ENST00000641373 517 ntBASIC13.24□□□□□ -0.29
LINC00477Q96M19 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LINC00477Q96M19 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LINC00477Q96M19 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 COX11P1-201ENST00000489116 835 ntBASIC13.23□□□□□ -0.29
LINC00477Q96M19 AC112698.1-201ENST00000510299 916 ntBASIC13.23□□□□□ -0.29
LINC00477Q96M19 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 TK1-205ENST00000590862 642 ntTSL 3 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 AC145285.6-201ENST00000604632 637 ntBASIC13.23□□□□□ -0.29
LINC00477Q96M19 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 AD000864.1-201ENST00000624076 2295 ntBASIC13.23□□□□□ -0.29
LINC00477Q96M19 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC13.23□□□□□ -0.29
LINC00477Q96M19 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LINC00477Q96M19 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms