Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 AL596257.1-201ENST00000641463 2694 ntBASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 RCN1P2-201ENST00000398357 915 ntBASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP3Q96DZ5 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AC073592.3-201ENST00000625118 1834 ntBASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AC079776.4-201ENST00000511039 504 ntBASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AF238378.1-201ENST00000526806 358 ntBASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AP002469.2-201ENST00000531724 424 ntBASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AC009113.1-201ENST00000570267 2443 ntBASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP3Q96DZ5 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
CLIP3Q96DZ5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms