Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHROOM3Q8TF72 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHROOM3Q8TF72 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 AC103564.2-201ENST00000432853 1299 ntBASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 AC117500.6-201ENST00000624871 588 ntBASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SHROOM3Q8TF72 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 AL353593.2-201ENST00000602529 1483 ntBASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 AC009533.2-201ENST00000543664 586 ntBASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 TP73-AS1-210ENST00000637775 1455 ntBASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHROOM3Q8TF72 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms