Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 TSSC2-201ENST00000450217 709 ntBASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
CCDC116Q8IYX3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC116Q8IYX3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.64■□□□□ 0.26
CCDC116Q8IYX3 AC010460.3-201ENST00000511359 1579 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AL353801.3-201ENST00000609898 542 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AP000550.4-202ENST00000639755 178 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AC141586.5-201ENST00000624546 2050 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 LTB4R2-202ENST00000528054 3092 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 AC139713.2-201ENST00000641328 2723 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 KRT18P1-202ENST00000452408 1331 ntBASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC116Q8IYX3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC116Q8IYX3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms