Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 COA5-202ENST00000409997 557 ntTSL 4 BASIC21.61■■□□□ 1.05
USP48Q86UV5 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC21.61■■□□□ 1.05
USP48Q86UV5 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
USP48Q86UV5 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
USP48Q86UV5 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC21.6■■□□□ 1.05
USP48Q86UV5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.6■■□□□ 1.05
USP48Q86UV5 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC21.6■■□□□ 1.05
USP48Q86UV5 AL596442.2-201ENST00000610240 980 ntBASIC21.6■■□□□ 1.05
USP48Q86UV5 AC020916.1-201ENST00000587762 1774 ntBASIC21.6■■□□□ 1.05
USP48Q86UV5 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.6■■□□□ 1.05
USP48Q86UV5 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.6■■□□□ 1.05
USP48Q86UV5 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.6■■□□□ 1.05
USP48Q86UV5 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USP48Q86UV5 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
USP48Q86UV5 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.59■■□□□ 1.05
USP48Q86UV5 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.59■■□□□ 1.05
USP48Q86UV5 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.59■■□□□ 1.05
USP48Q86UV5 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.59■■□□□ 1.05
USP48Q86UV5 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC21.59■■□□□ 1.05
USP48Q86UV5 AC125634.1-201ENST00000438758 1403 ntBASIC21.59■■□□□ 1.05
USP48Q86UV5 MTCL1P1-201ENST00000446207 792 ntBASIC21.59■■□□□ 1.05
USP48Q86UV5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.59■■□□□ 1.05
USP48Q86UV5 KRT18P41-201ENST00000518924 1277 ntBASIC21.59■■□□□ 1.05
USP48Q86UV5 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 AC002347.1-201ENST00000569543 541 ntBASIC21.59■■□□□ 1.05
USP48Q86UV5 NKAPP1-205ENST00000585790 367 ntBASIC21.59■■□□□ 1.05
USP48Q86UV5 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.59■■□□□ 1.05
USP48Q86UV5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
USP48Q86UV5 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
USP48Q86UV5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.59■■□□□ 1.05
USP48Q86UV5 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
USP48Q86UV5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.59■■□□□ 1.05
USP48Q86UV5 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
USP48Q86UV5 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.59■■□□□ 1.05
USP48Q86UV5 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.58■■□□□ 1.05
USP48Q86UV5 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.58■■□□□ 1.05
USP48Q86UV5 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
USP48Q86UV5 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 AC211486.1-202ENST00000416371 468 ntBASIC21.58■■□□□ 1.05
USP48Q86UV5 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 AC211476.1-201ENST00000503899 468 ntBASIC21.58■■□□□ 1.05
USP48Q86UV5 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.58■■□□□ 1.05
USP48Q86UV5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.58■■□□□ 1.05
USP48Q86UV5 MIR3197-201ENST00000582241 73 ntBASIC21.58■■□□□ 1.05
USP48Q86UV5 MTDHP4-201ENST00000600287 670 ntBASIC21.58■■□□□ 1.05
USP48Q86UV5 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC21.58■■□□□ 1.05
USP48Q86UV5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP48Q86UV5 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
USP48Q86UV5 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
USP48Q86UV5 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.58■■□□□ 1.05
USP48Q86UV5 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.58■■□□□ 1.04
USP48Q86UV5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP48Q86UV5 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP48Q86UV5 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
USP48Q86UV5 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
USP48Q86UV5 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms