Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 METTL26-204ENST00000397665 558 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 AL592309.1-201ENST00000443127 649 ntBASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 OARD1-208ENST00000469104 704 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 SLC25A6P2-201ENST00000497974 877 ntBASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 FAM86C2P-203ENST00000528684 1004 ntBASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 CYP51A1P2-201ENST00000419457 1499 ntBASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
KRT28Q7Z3Y7 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 MYCLP1-201ENST00000372451 1075 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 BASP1P1-201ENST00000430708 665 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 CNN2P2-201ENST00000443536 909 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 TSPY16P-201ENST00000449843 468 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 CNN2P3-201ENST00000450201 906 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 AL512356.2-201ENST00000546955 174 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 AL136317.3-201ENST00000618497 906 ntBASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
KRT28Q7Z3Y7 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 UGT1A2P-201ENST00000454886 866 ntBASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 AC079140.1-201ENST00000508039 487 ntBASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 AC087641.1-201ENST00000557561 1021 ntBASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
KRT28Q7Z3Y7 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 TUBB3P1-201ENST00000405796 1332 ntBASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC23.64■■□□□ 1.38
KRT28Q7Z3Y7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 MIR943-201ENST00000401286 94 ntBASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 AC140658.5-201ENST00000438532 169 ntBASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 TERF1P3-201ENST00000505638 1227 ntBASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 AC243562.1-201ENST00000560672 389 ntBASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 AC012645.4-201ENST00000610691 1061 ntBASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC23.64■■□□□ 1.37
KRT28Q7Z3Y7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms