Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS53Q5VIR6 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.3■■□□□ 1
VPS53Q5VIR6 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
VPS53Q5VIR6 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
VPS53Q5VIR6 AC096633.1-201ENST00000422446 749 ntBASIC21.3■■□□□ 1
VPS53Q5VIR6 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.3■■□□□ 1
VPS53Q5VIR6 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS53Q5VIR6 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.3■■□□□ 1
VPS53Q5VIR6 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.3■■□□□ 1
VPS53Q5VIR6 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS53Q5VIR6 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
VPS53Q5VIR6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 AC007967.3-201ENST00000434308 558 ntBASIC21.29■■□□□ 1
VPS53Q5VIR6 AC104819.1-201ENST00000504587 486 ntBASIC21.29■■□□□ 1
VPS53Q5VIR6 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.29■■□□□ 1
VPS53Q5VIR6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.29■■□□□ 1
VPS53Q5VIR6 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.29■■□□□ 1
VPS53Q5VIR6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.29■■□□□ 1
VPS53Q5VIR6 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS53Q5VIR6 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS53Q5VIR6 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS53Q5VIR6 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.28■■□□□ 1
VPS53Q5VIR6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 VENTXP7-201ENST00000475503 772 ntBASIC21.28■■□□□ 1
VPS53Q5VIR6 MIR3652-201ENST00000579335 131 ntBASIC21.28■■□□□ 1
VPS53Q5VIR6 AC099336.1-202ENST00000602961 463 ntBASIC21.28■■□□□ 1
VPS53Q5VIR6 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.28■■□□□ 1
VPS53Q5VIR6 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.28■■□□□ 1
VPS53Q5VIR6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.28■■□□□ 1
VPS53Q5VIR6 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.28■■□□□ 1
VPS53Q5VIR6 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS53Q5VIR6 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC21.27■■□□□ 1
VPS53Q5VIR6 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
VPS53Q5VIR6 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.27■■□□□ 1
VPS53Q5VIR6 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.27■■□□□ 1
VPS53Q5VIR6 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.27■■□□□ 1
VPS53Q5VIR6 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.27■■□□□ 1
VPS53Q5VIR6 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
VPS53Q5VIR6 MINOS1P3-201ENST00000457048 203 ntBASIC21.27■■□□□ 1
VPS53Q5VIR6 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.27■■□□□ 1
VPS53Q5VIR6 FOSL1P1-201ENST00000511041 816 ntBASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms