Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CRYGFP-201ENST00000418459 633 ntBASIC15.82■□□□□ 0.12
CCDC58Q4VC31 SLC25A1P2-201ENST00000430693 912 ntBASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TSPY17P-201ENST00000450329 467 ntBASIC15.82■□□□□ 0.12
CCDC58Q4VC31 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AC116407.2-201ENST00000613639 860 ntBASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AL023803.3-201ENST00000615559 522 ntBASIC15.82■□□□□ 0.12
CCDC58Q4VC31 LINC01451-201ENST00000623792 534 ntBASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC58Q4VC31 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 ID1-201ENST00000376105 1233 ntBASIC15.81■□□□□ 0.12
CCDC58Q4VC31 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 AL353719.1-201ENST00000566847 864 ntBASIC15.81■□□□□ 0.12
CCDC58Q4VC31 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 AP005242.2-201ENST00000580065 1175 ntBASIC15.81■□□□□ 0.12
CCDC58Q4VC31 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.81■□□□□ 0.12
CCDC58Q4VC31 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC58Q4VC31 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms