Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.75■□□□□ 0.27
LIM2P55344 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.75■□□□□ 0.27
LIM2P55344 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.75■□□□□ 0.27
LIM2P55344 BNIP3P18-201ENST00000593976 575 ntBASIC16.75■□□□□ 0.27
LIM2P55344 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LIM2P55344 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
LIM2P55344 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.75■□□□□ 0.27
LIM2P55344 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.75■□□□□ 0.27
LIM2P55344 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIM2P55344 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.75■□□□□ 0.27
LIM2P55344 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 REXO1L11P-201ENST00000620964 1927 ntBASIC16.74■□□□□ 0.27
LIM2P55344 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
LIM2P55344 HTR7P1-202ENST00000624664 4411 ntBASIC16.74■□□□□ 0.27
LIM2P55344 TP73-AS1-210ENST00000637775 1455 ntBASIC16.74■□□□□ 0.27
LIM2P55344 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.74■□□□□ 0.27
LIM2P55344 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.74■□□□□ 0.27
LIM2P55344 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.74■□□□□ 0.27
LIM2P55344 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.74■□□□□ 0.27
LIM2P55344 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
LIM2P55344 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 MIR3652-201ENST00000579335 131 ntBASIC16.74■□□□□ 0.27
LIM2P55344 AC099336.1-202ENST00000602961 463 ntBASIC16.74■□□□□ 0.27
LIM2P55344 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 AC141586.5-201ENST00000624546 2050 ntBASIC16.74■□□□□ 0.27
LIM2P55344 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
LIM2P55344 AL355312.1-201ENST00000407115 2176 ntBASIC16.74■□□□□ 0.27
LIM2P55344 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIM2P55344 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIM2P55344 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIM2P55344 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 FAM220CP-201ENST00000395253 831 ntBASIC16.73■□□□□ 0.27
LIM2P55344 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIM2P55344 AC096582.2-201ENST00000510860 516 ntBASIC16.73■□□□□ 0.27
LIM2P55344 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.73■□□□□ 0.27
LIM2P55344 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
LIM2P55344 AC011467.2-201ENST00000598425 242 ntBASIC16.73■□□□□ 0.27
LIM2P55344 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.73■□□□□ 0.27
LIM2P55344 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.73■□□□□ 0.27
LIM2P55344 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.73■□□□□ 0.27
LIM2P55344 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
LIM2P55344 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIM2P55344 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 AC080080.1-201ENST00000625121 2420 ntBASIC16.72■□□□□ 0.27
LIM2P55344 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.72■□□□□ 0.27
LIM2P55344 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LIM2P55344 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.72■□□□□ 0.27
LIM2P55344 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms