Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMK1P53667 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMK1P53667 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIMK1P53667 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMK1P53667 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMK1P53667 MIR4745-201ENST00000577608 62 ntBASIC17.4■□□□□ 0.38
LIMK1P53667 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIMK1P53667 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIMK1P53667 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 AC063926.2-201ENST00000623766 1308 ntBASIC17.4■□□□□ 0.38
LIMK1P53667 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMK1P53667 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMK1P53667 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 AL024508.2-201ENST00000607749 1894 ntBASIC17.39■□□□□ 0.38
LIMK1P53667 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
LIMK1P53667 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMK1P53667 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMK1P53667 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LIMK1P53667 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMK1P53667 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMK1P53667 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMK1P53667 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LIMK1P53667 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.39■□□□□ 0.37
LIMK1P53667 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMK1P53667 AC004449.1-201ENST00000564240 433 ntBASIC17.39■□□□□ 0.37
LIMK1P53667 AC018845.2-201ENST00000568326 409 ntBASIC17.39■□□□□ 0.37
LIMK1P53667 MIR4751-201ENST00000578027 74 ntBASIC17.39■□□□□ 0.37
LIMK1P53667 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMK1P53667 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMK1P53667 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMK1P53667 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMK1P53667 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMK1P53667 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
LIMK1P53667 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMK1P53667 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMK1P53667 AC141586.3-201ENST00000562166 1838 ntBASIC17.38■□□□□ 0.37
LIMK1P53667 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMK1P53667 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.38■□□□□ 0.37
LIMK1P53667 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMK1P53667 AC112698.1-201ENST00000510299 916 ntBASIC17.38■□□□□ 0.37
LIMK1P53667 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LIMK1P53667 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMK1P53667 PDPK2P-202ENST00000562415 1191 ntBASIC17.38■□□□□ 0.37
LIMK1P53667 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.38■□□□□ 0.37
LIMK1P53667 AC004835.2-201ENST00000603762 682 ntBASIC17.38■□□□□ 0.37
LIMK1P53667 AC004706.3-202ENST00000621574 984 ntBASIC17.38■□□□□ 0.37
LIMK1P53667 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
LIMK1P53667 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LIMK1P53667 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMK1P53667 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.38■□□□□ 0.37
LIMK1P53667 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMK1P53667 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMK1P53667 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMK1P53667 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LIMK1P53667 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
LIMK1P53667 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
LIMK1P53667 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMK1P53667 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMK1P53667 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMK1P53667 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMK1P53667 AC108073.2-201ENST00000464002 357 ntBASIC17.37■□□□□ 0.37
LIMK1P53667 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMK1P53667 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMK1P53667 AC025678.2-201ENST00000562061 970 ntBASIC17.37■□□□□ 0.37
LIMK1P53667 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms