Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RFC3P40938 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.16■□□□□ 0.18
RFC3P40938 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.16■□□□□ 0.18
RFC3P40938 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.16■□□□□ 0.18
RFC3P40938 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.16■□□□□ 0.18
RFC3P40938 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.16■□□□□ 0.18
RFC3P40938 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.16■□□□□ 0.18
RFC3P40938 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
RFC3P40938 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
RFC3P40938 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.15■□□□□ 0.18
RFC3P40938 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.15■□□□□ 0.18
RFC3P40938 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.15■□□□□ 0.18
RFC3P40938 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.15■□□□□ 0.18
RFC3P40938 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 AC021087.4-201ENST00000563761 564 ntBASIC16.15■□□□□ 0.18
RFC3P40938 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.15■□□□□ 0.18
RFC3P40938 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
RFC3P40938 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.15■□□□□ 0.18
RFC3P40938 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 AL356309.3-201ENST00000624132 1934 ntBASIC16.15■□□□□ 0.18
RFC3P40938 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RFC3P40938 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 AC009113.1-201ENST00000570267 2443 ntBASIC16.15■□□□□ 0.18
RFC3P40938 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFC3P40938 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
RFC3P40938 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
RFC3P40938 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
RFC3P40938 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
RFC3P40938 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RFC3P40938 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
RFC3P40938 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 SIRPAP1-201ENST00000448467 1770 ntBASIC16.14■□□□□ 0.17
RFC3P40938 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RFC3P40938 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 AC093909.1-201ENST00000504731 1122 ntBASIC16.14■□□□□ 0.17
RFC3P40938 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.14■□□□□ 0.17
RFC3P40938 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.14■□□□□ 0.17
RFC3P40938 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.14■□□□□ 0.17
RFC3P40938 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.14■□□□□ 0.17
RFC3P40938 FAM215A-202ENST00000632077 792 ntBASIC16.14■□□□□ 0.17
RFC3P40938 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.14■□□□□ 0.17
RFC3P40938 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RFC3P40938 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 AC012313.1-201ENST00000593393 3059 ntBASIC16.14■□□□□ 0.17
RFC3P40938 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 AC022898.2-201ENST00000616822 1312 ntBASIC16.14■□□□□ 0.17
RFC3P40938 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
RFC3P40938 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFC3P40938 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.13■□□□□ 0.17
RFC3P40938 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.13■□□□□ 0.17
RFC3P40938 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFC3P40938 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.13■□□□□ 0.17
RFC3P40938 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms