Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC23.04■■□□□ 1.28
COL18A1P39060 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC23.04■■□□□ 1.28
COL18A1P39060 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC23.03■■□□□ 1.28
COL18A1P39060 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
COL18A1P39060 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
COL18A1P39060 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL18A1P39060 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL18A1P39060 HLA-DRB6-201ENST00000411500 1235 ntBASIC23.03■■□□□ 1.28
COL18A1P39060 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
COL18A1P39060 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL18A1P39060 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.03■■□□□ 1.28
COL18A1P39060 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC23.02■■□□□ 1.28
COL18A1P39060 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 COPE-202ENST00000349893 948 ntTSL 2 BASIC23.02■■□□□ 1.28
COL18A1P39060 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
COL18A1P39060 PMS2P4-201ENST00000412466 1052 ntBASIC23.02■■□□□ 1.28
COL18A1P39060 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC23.02■■□□□ 1.28
COL18A1P39060 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC23.02■■□□□ 1.28
COL18A1P39060 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
COL18A1P39060 AC046185.3-201ENST00000623228 1824 ntBASIC23.02■■□□□ 1.28
COL18A1P39060 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL18A1P39060 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC23.01■■□□□ 1.27
COL18A1P39060 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC23.01■■□□□ 1.27
COL18A1P39060 AC243562.1-201ENST00000560672 389 ntBASIC23.01■■□□□ 1.27
COL18A1P39060 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL18A1P39060 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC23.01■■□□□ 1.27
COL18A1P39060 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL18A1P39060 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC23.01■■□□□ 1.27
COL18A1P39060 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC23.01■■□□□ 1.27
COL18A1P39060 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
COL18A1P39060 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.01■■□□□ 1.27
COL18A1P39060 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC23.01■■□□□ 1.27
COL18A1P39060 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC23.01■■□□□ 1.27
COL18A1P39060 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL18A1P39060 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL18A1P39060 UGT1A2P-201ENST00000454886 866 ntBASIC23.01■■□□□ 1.27
COL18A1P39060 AC079140.1-201ENST00000508039 487 ntBASIC23.01■■□□□ 1.27
COL18A1P39060 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC23.01■■□□□ 1.27
COL18A1P39060 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
COL18A1P39060 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL18A1P39060 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC23■■□□□ 1.27
COL18A1P39060 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC23■■□□□ 1.27
COL18A1P39060 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC23■■□□□ 1.27
COL18A1P39060 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC23■■□□□ 1.27
COL18A1P39060 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC23■■□□□ 1.27
COL18A1P39060 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC23■■□□□ 1.27
COL18A1P39060 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC23■■□□□ 1.27
COL18A1P39060 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC23■■□□□ 1.27
COL18A1P39060 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL18A1P39060 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 AC002056.1-201ENST00000395613 760 ntBASIC22.99■■□□□ 1.27
COL18A1P39060 TFAMP1-201ENST00000412727 736 ntBASIC22.99■■□□□ 1.27
COL18A1P39060 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC22.99■■□□□ 1.27
COL18A1P39060 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 MIR4745-201ENST00000577608 62 ntBASIC22.99■■□□□ 1.27
COL18A1P39060 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
COL18A1P39060 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 KRT18P55-202ENST00000578578 1546 ntBASIC22.99■■□□□ 1.27
COL18A1P39060 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms