Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.87■□□□□ 0.29
MSX2P35548 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.87■□□□□ 0.29
MSX2P35548 AC097488.1-201ENST00000507834 756 ntBASIC16.87■□□□□ 0.29
MSX2P35548 C1QBPP2-201ENST00000528754 825 ntBASIC16.87■□□□□ 0.29
MSX2P35548 LINC01451-201ENST00000623792 534 ntBASIC16.87■□□□□ 0.29
MSX2P35548 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX2P35548 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.87■□□□□ 0.29
MSX2P35548 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
MSX2P35548 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX2P35548 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX2P35548 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 RNF216P1-203ENST00000404404 2427 ntBASIC16.87■□□□□ 0.29
MSX2P35548 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
MSX2P35548 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 KRT8P7-201ENST00000533003 1432 ntBASIC16.87■□□□□ 0.29
MSX2P35548 AL603756.1-201ENST00000606511 2163 ntBASIC16.87■□□□□ 0.29
MSX2P35548 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX2P35548 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
MSX2P35548 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.86■□□□□ 0.29
MSX2P35548 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.86■□□□□ 0.29
MSX2P35548 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 CR769767.2-201ENST00000622735 460 ntBASIC16.86■□□□□ 0.29
MSX2P35548 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX2P35548 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX2P35548 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX2P35548 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MSX2P35548 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.85■□□□□ 0.29
MSX2P35548 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
MSX2P35548 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.85■□□□□ 0.29
MSX2P35548 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.85■□□□□ 0.29
MSX2P35548 AC104390.1-201ENST00000555663 520 ntBASIC16.85■□□□□ 0.29
MSX2P35548 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
MSX2P35548 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MSX2P35548 AC022898.2-201ENST00000616822 1312 ntBASIC16.85■□□□□ 0.29
MSX2P35548 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
MSX2P35548 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
MSX2P35548 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
MSX2P35548 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms