Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 AC022616.7-201ENST00000525383 220 ntBASIC13.48□□□□□ -0.25
HLA-DMBP28068 CD81-212ENST00000526072 1172 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 AL031432.5-201ENST00000641059 760 ntBASIC13.48□□□□□ -0.25
HLA-DMBP28068 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 AD000864.1-201ENST00000624076 2295 ntBASIC13.48□□□□□ -0.25
HLA-DMBP28068 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 MED25-212ENST00000618715 1467 ntTSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AL138688.1-201ENST00000624851 1594 ntBASIC13.47□□□□□ -0.25
HLA-DMBP28068 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 HES2-202ENST00000377836 507 ntTSL 2 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AP000523.1-201ENST00000398242 1049 ntBASIC13.47□□□□□ -0.25
HLA-DMBP28068 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AC063952.2-201ENST00000498792 1227 ntBASIC13.47□□□□□ -0.25
HLA-DMBP28068 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 LTBR-211ENST00000543190 785 ntTSL 3 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AC008687.5-201ENST00000593746 558 ntBASIC13.47□□□□□ -0.25
HLA-DMBP28068 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 AC024563.2-201ENST00000603282 481 ntBASIC13.47□□□□□ -0.25
HLA-DMBP28068 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
HLA-DMBP28068 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HLA-DMBP28068 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms