Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A1P12109 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
COL6A1P12109 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.35■□□□□ 0.69
COL6A1P12109 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.35■□□□□ 0.69
COL6A1P12109 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 TFAMP1-201ENST00000412727 736 ntBASIC19.35■□□□□ 0.69
COL6A1P12109 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A1P12109 CNN2P2-201ENST00000443536 909 ntBASIC19.35■□□□□ 0.69
COL6A1P12109 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
COL6A1P12109 CNN2P3-201ENST00000450201 906 ntBASIC19.35■□□□□ 0.69
COL6A1P12109 TIMM8BP1-201ENST00000452384 211 ntBASIC19.35■□□□□ 0.69
COL6A1P12109 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.35■□□□□ 0.69
COL6A1P12109 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A1P12109 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A1P12109 AC026120.1-201ENST00000611536 926 ntBASIC19.35■□□□□ 0.69
COL6A1P12109 AL136317.3-201ENST00000618497 906 ntBASIC19.35■□□□□ 0.69
COL6A1P12109 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A1P12109 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.35■□□□□ 0.69
COL6A1P12109 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A1P12109 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.34■□□□□ 0.69
COL6A1P12109 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A1P12109 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
COL6A1P12109 UGT1A2P-201ENST00000454886 866 ntBASIC19.34■□□□□ 0.69
COL6A1P12109 STK19B-204ENST00000512515 211 ntBASIC19.34■□□□□ 0.69
COL6A1P12109 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.34■□□□□ 0.69
COL6A1P12109 AC109462.3-201ENST00000573934 613 ntBASIC19.34■□□□□ 0.69
COL6A1P12109 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.34■□□□□ 0.69
COL6A1P12109 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.34■□□□□ 0.69
COL6A1P12109 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.34■□□□□ 0.69
COL6A1P12109 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
COL6A1P12109 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 PI4KAP1-204ENST00000612579 1703 ntBASIC19.34■□□□□ 0.69
COL6A1P12109 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A1P12109 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
COL6A1P12109 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
COL6A1P12109 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
COL6A1P12109 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
COL6A1P12109 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A1P12109 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A1P12109 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 AL355306.1-201ENST00000415580 579 ntBASIC19.33■□□□□ 0.68
COL6A1P12109 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.33■□□□□ 0.68
COL6A1P12109 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A1P12109 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.33■□□□□ 0.68
COL6A1P12109 KRT8P48-201ENST00000515599 1220 ntBASIC19.33■□□□□ 0.68
COL6A1P12109 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A1P12109 ACTL9-202ENST00000612068 1252 ntBASIC19.33■□□□□ 0.68
COL6A1P12109 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
COL6A1P12109 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A1P12109 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
COL6A1P12109 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
COL6A1P12109 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A1P12109 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A1P12109 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A1P12109 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
COL6A1P12109 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
COL6A1P12109 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A1P12109 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
COL6A1P12109 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.32■□□□□ 0.68
COL6A1P12109 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A1P12109 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A1P12109 AC009336.1-201ENST00000608941 1553 ntBASIC19.32■□□□□ 0.68
COL6A1P12109 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL6A1P12109 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A1P12109 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A1P12109 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A1P12109 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A1P12109 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms