Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.81■□□□□ 0.92
HMGB1P09429 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
HMGB1P09429 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 AC091607.1-201ENST00000490318 1060 ntBASIC20.81■□□□□ 0.92
HMGB1P09429 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.81■□□□□ 0.92
HMGB1P09429 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 AC011467.2-201ENST00000598425 242 ntBASIC20.81■□□□□ 0.92
HMGB1P09429 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.8■□□□□ 0.92
HMGB1P09429 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 OR6D1P-202ENST00000641007 5290 ntBASIC20.8■□□□□ 0.92
HMGB1P09429 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
HMGB1P09429 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.8■□□□□ 0.92
HMGB1P09429 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.8■□□□□ 0.92
HMGB1P09429 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HMGB1P09429 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 MIR1224-201ENST00000408193 85 ntBASIC20.8■□□□□ 0.92
HMGB1P09429 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.8■□□□□ 0.92
HMGB1P09429 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.8■□□□□ 0.92
HMGB1P09429 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.8■□□□□ 0.92
HMGB1P09429 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.8■□□□□ 0.92
HMGB1P09429 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB1P09429 AC020916.1-201ENST00000587762 1774 ntBASIC20.8■□□□□ 0.92
HMGB1P09429 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 AC108860.2-201ENST00000562760 2183 ntBASIC20.79■□□□□ 0.92
HMGB1P09429 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HMGB1P09429 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HMGB1P09429 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGB1P09429 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
HMGB1P09429 KRT17P6-201ENST00000453795 1220 ntBASIC20.79■□□□□ 0.92
HMGB1P09429 TOB2P1-201ENST00000469761 992 ntBASIC20.79■□□□□ 0.92
HMGB1P09429 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.79■□□□□ 0.92
HMGB1P09429 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.79■□□□□ 0.92
HMGB1P09429 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.79■□□□□ 0.92
HMGB1P09429 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HMGB1P09429 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.79■□□□□ 0.92
HMGB1P09429 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 AL049757.1-201ENST00000616842 1596 ntBASIC20.79■□□□□ 0.92
HMGB1P09429 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGB1P09429 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGB1P09429 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGB1P09429 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGB1P09429 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
HMGB1P09429 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms