Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.09■□□□□ 0.33
LDLRP01130 AP000593.1-201ENST00000393668 712 ntBASIC17.09■□□□□ 0.33
LDLRP01130 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.09■□□□□ 0.33
LDLRP01130 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.09■□□□□ 0.33
LDLRP01130 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.09■□□□□ 0.33
LDLRP01130 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.09■□□□□ 0.33
LDLRP01130 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
LDLRP01130 NEK4P2-201ENST00000580004 1012 ntBASIC17.09■□□□□ 0.33
LDLRP01130 AC092329.2-201ENST00000598402 547 ntBASIC17.09■□□□□ 0.33
LDLRP01130 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 AC004263.2-201ENST00000617183 678 ntBASIC17.09■□□□□ 0.33
LDLRP01130 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LDLRP01130 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.09■□□□□ 0.33
LDLRP01130 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LDLRP01130 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 LINC00602-201ENST00000629776 2065 ntBASIC17.09■□□□□ 0.33
LDLRP01130 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LDLRP01130 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDLRP01130 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
LDLRP01130 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
LDLRP01130 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDLRP01130 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
LDLRP01130 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
LDLRP01130 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDLRP01130 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
LDLRP01130 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDLRP01130 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDLRP01130 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDLRP01130 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LDLRP01130 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LDLRP01130 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDLRP01130 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
LDLRP01130 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LDLRP01130 KRT18P55-202ENST00000578578 1546 ntBASIC17.08■□□□□ 0.32
LDLRP01130 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.08■□□□□ 0.32
LDLRP01130 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.08■□□□□ 0.32
LDLRP01130 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.08■□□□□ 0.32
LDLRP01130 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.08■□□□□ 0.32
LDLRP01130 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
LDLRP01130 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.08■□□□□ 0.32
LDLRP01130 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LDLRP01130 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LDLRP01130 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.08■□□□□ 0.32
LDLRP01130 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LDLRP01130 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDLRP01130 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
LDLRP01130 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.07■□□□□ 0.32
LDLRP01130 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 AL121761.2-201ENST00000598007 1648 ntBASIC17.07■□□□□ 0.32
LDLRP01130 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.07■□□□□ 0.32
LDLRP01130 SPDYE13P-201ENST00000445314 798 ntBASIC17.07■□□□□ 0.32
LDLRP01130 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.07■□□□□ 0.32
LDLRP01130 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.07■□□□□ 0.32
LDLRP01130 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.07■□□□□ 0.32
LDLRP01130 GCSHP2-201ENST00000560971 527 ntBASIC17.07■□□□□ 0.32
LDLRP01130 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.07■□□□□ 0.32
LDLRP01130 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.07■□□□□ 0.32
LDLRP01130 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.07■□□□□ 0.32
LDLRP01130 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.07■□□□□ 0.32
LDLRP01130 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDLRP01130 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms