Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 AC104076.2-201ENST00000448912 469 ntBASIC17.26■□□□□ 0.35
SIX3O95343 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX3O95343 AL390719.2-201ENST00000606993 987 ntBASIC17.26■□□□□ 0.35
SIX3O95343 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 LINC01311-201ENST00000565162 1445 ntBASIC17.26■□□□□ 0.35
SIX3O95343 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX3O95343 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SIX3O95343 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 Z83836.1-201ENST00000624605 1642 ntBASIC17.25■□□□□ 0.35
SIX3O95343 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX3O95343 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX3O95343 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX3O95343 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX3O95343 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 AC092647.4-201ENST00000457211 535 ntBASIC17.25■□□□□ 0.35
SIX3O95343 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX3O95343 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX3O95343 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SIX3O95343 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SIX3O95343 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX3O95343 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.24■□□□□ 0.35
SIX3O95343 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.24■□□□□ 0.35
SIX3O95343 LINC01023-201ENST00000606054 436 ntBASIC17.24■□□□□ 0.35
SIX3O95343 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SIX3O95343 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX3O95343 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX3O95343 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SIX3O95343 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.24■□□□□ 0.35
SIX3O95343 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX3O95343 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SIX3O95343 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX3O95343 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms