Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.59■□□□□ 0.57
RTN3O95197 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RTN3O95197 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
RTN3O95197 BICD1-207ENST00000551848 1962 ntBASIC18.59■□□□□ 0.57
RTN3O95197 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.59■□□□□ 0.57
RTN3O95197 AC009053.2-201ENST00000563701 2365 ntBASIC18.59■□□□□ 0.57
RTN3O95197 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.59■□□□□ 0.57
RTN3O95197 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.59■□□□□ 0.57
RTN3O95197 SLC25A6P4-201ENST00000586535 553 ntBASIC18.59■□□□□ 0.57
RTN3O95197 AP000867.4-201ENST00000641616 219 ntBASIC18.59■□□□□ 0.57
RTN3O95197 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
RTN3O95197 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.59■□□□□ 0.57
RTN3O95197 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
RTN3O95197 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTN3O95197 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.58■□□□□ 0.57
RTN3O95197 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
RTN3O95197 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.58■□□□□ 0.57
RTN3O95197 AC138028.4-201ENST00000564984 1845 ntBASIC18.58■□□□□ 0.57
RTN3O95197 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTN3O95197 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTN3O95197 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RTN3O95197 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.58■□□□□ 0.57
RTN3O95197 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.58■□□□□ 0.56
RTN3O95197 KRT18P67-201ENST00000432816 1264 ntBASIC18.58■□□□□ 0.56
RTN3O95197 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.58■□□□□ 0.56
RTN3O95197 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
RTN3O95197 AF186996.4-201ENST00000467186 377 ntBASIC18.58■□□□□ 0.56
RTN3O95197 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.58■□□□□ 0.56
RTN3O95197 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.58■□□□□ 0.56
RTN3O95197 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.58■□□□□ 0.56
RTN3O95197 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.58■□□□□ 0.56
RTN3O95197 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.58■□□□□ 0.56
RTN3O95197 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.58■□□□□ 0.56
RTN3O95197 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.58■□□□□ 0.56
RTN3O95197 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.56
RTN3O95197 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
RTN3O95197 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
RTN3O95197 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.58■□□□□ 0.56
RTN3O95197 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RTN3O95197 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RTN3O95197 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.57■□□□□ 0.56
RTN3O95197 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RTN3O95197 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RTN3O95197 NOC2LP2-201ENST00000407594 1944 ntBASIC18.57■□□□□ 0.56
RTN3O95197 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 MRPL3P1-201ENST00000400109 1033 ntBASIC18.57■□□□□ 0.56
RTN3O95197 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RTN3O95197 AC073648.2-201ENST00000510116 352 ntBASIC18.57■□□□□ 0.56
RTN3O95197 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.57■□□□□ 0.56
RTN3O95197 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
RTN3O95197 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.57■□□□□ 0.56
RTN3O95197 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RTN3O95197 AD001527.2-201ENST00000622994 785 ntBASIC18.57■□□□□ 0.56
RTN3O95197 AL139288.1-201ENST00000623748 933 ntBASIC18.57■□□□□ 0.56
RTN3O95197 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.57■□□□□ 0.56
RTN3O95197 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 AC009949.1-201ENST00000623048 1830 ntBASIC18.57■□□□□ 0.56
RTN3O95197 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.57■□□□□ 0.56
RTN3O95197 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.57■□□□□ 0.56
RTN3O95197 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RTN3O95197 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.57■□□□□ 0.56
RTN3O95197 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
RTN3O95197 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.57■□□□□ 0.56
RTN3O95197 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.56■□□□□ 0.56
RTN3O95197 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTN3O95197 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTN3O95197 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
RTN3O95197 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RTN3O95197 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTN3O95197 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTN3O95197 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms