Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 SLC25A1P2-201ENST00000430693 912 ntBASIC20.55■□□□□ 0.88
PRPF40AO75400 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF40AO75400 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.55■□□□□ 0.88
PRPF40AO75400 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF40AO75400 AL023803.3-201ENST00000615559 522 ntBASIC20.55■□□□□ 0.88
PRPF40AO75400 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF40AO75400 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PRPF40AO75400 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
PRPF40AO75400 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.54■□□□□ 0.88
PRPF40AO75400 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.54■□□□□ 0.88
PRPF40AO75400 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.54■□□□□ 0.88
PRPF40AO75400 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.54■□□□□ 0.88
PRPF40AO75400 C2orf69P3-201ENST00000565542 1120 ntBASIC20.54■□□□□ 0.88
PRPF40AO75400 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PRPF40AO75400 AC010240.3-201ENST00000607688 395 ntBASIC20.54■□□□□ 0.88
PRPF40AO75400 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
PRPF40AO75400 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF40AO75400 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PRPF40AO75400 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.53■□□□□ 0.88
PRPF40AO75400 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
PRPF40AO75400 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.53■□□□□ 0.88
PRPF40AO75400 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.53■□□□□ 0.88
PRPF40AO75400 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.53■□□□□ 0.88
PRPF40AO75400 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.53■□□□□ 0.88
PRPF40AO75400 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.53■□□□□ 0.88
PRPF40AO75400 AC097493.4-201ENST00000641197 219 ntBASIC20.53■□□□□ 0.88
PRPF40AO75400 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.53■□□□□ 0.88
PRPF40AO75400 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PRPF40AO75400 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.53■□□□□ 0.88
PRPF40AO75400 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PRPF40AO75400 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF40AO75400 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PRPF40AO75400 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
PRPF40AO75400 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.52■□□□□ 0.88
PRPF40AO75400 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.52■□□□□ 0.88
PRPF40AO75400 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.52■□□□□ 0.88
PRPF40AO75400 AL353719.1-201ENST00000566847 864 ntBASIC20.52■□□□□ 0.88
PRPF40AO75400 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRPF40AO75400 AC012306.2-201ENST00000609350 630 ntBASIC20.52■□□□□ 0.88
PRPF40AO75400 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.52■□□□□ 0.88
PRPF40AO75400 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms