Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 AKR1C7P-201ENST00000305623 895 ntBASIC19.29■□□□□ 0.68
CLDN3O15551 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 AL121894.2-201ENST00000602977 491 ntBASIC19.29■□□□□ 0.68
CLDN3O15551 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN3O15551 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 SIRPAP1-201ENST00000448467 1770 ntBASIC19.29■□□□□ 0.68
CLDN3O15551 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.29■□□□□ 0.68
CLDN3O15551 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 AC012317.2-201ENST00000623305 2251 ntBASIC19.28■□□□□ 0.68
CLDN3O15551 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.28■□□□□ 0.68
CLDN3O15551 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.28■□□□□ 0.68
CLDN3O15551 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 AP001269.4-201ENST00000609611 512 ntBASIC19.28■□□□□ 0.68
CLDN3O15551 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CLDN3O15551 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CLDN3O15551 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLDN3O15551 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 AP005117.1-201ENST00000584346 1413 ntBASIC19.27■□□□□ 0.68
CLDN3O15551 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
CLDN3O15551 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.27■□□□□ 0.68
CLDN3O15551 RBM17P3-201ENST00000417687 1192 ntBASIC19.27■□□□□ 0.68
CLDN3O15551 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 AC106795.1-205ENST00000512851 1056 ntBASIC19.27■□□□□ 0.68
CLDN3O15551 AF238378.1-201ENST00000526806 358 ntBASIC19.27■□□□□ 0.68
CLDN3O15551 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.27■□□□□ 0.68
CLDN3O15551 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.27■□□□□ 0.68
CLDN3O15551 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLDN3O15551 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CLDN3O15551 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.27■□□□□ 0.68
CLDN3O15551 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.27■□□□□ 0.68
CLDN3O15551 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN3O15551 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN3O15551 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN3O15551 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.27■□□□□ 0.67
CLDN3O15551 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLDN3O15551 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms