Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC29.88■■■□□ 2.37
CUX2O14529 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CUX2O14529 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX2O14529 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX2O14529 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC29.88■■■□□ 2.37
CUX2O14529 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC29.88■■■□□ 2.37
CUX2O14529 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX2O14529 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC29.87■■■□□ 2.37
CUX2O14529 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC29.87■■■□□ 2.37
CUX2O14529 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC29.87■■■□□ 2.37
CUX2O14529 AC003101.2-201ENST00000612557 442 ntBASIC29.87■■■□□ 2.37
CUX2O14529 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC29.87■■■□□ 2.37
CUX2O14529 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC29.87■■■□□ 2.37
CUX2O14529 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC29.87■■■□□ 2.37
CUX2O14529 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC29.87■■■□□ 2.37
CUX2O14529 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX2O14529 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX2O14529 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX2O14529 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CUX2O14529 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX2O14529 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CUX2O14529 COBL-210ENST00000632460 1941 ntTSL 5 BASIC29.86■■■□□ 2.37
CUX2O14529 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CUX2O14529 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX2O14529 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CUX2O14529 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC29.86■■■□□ 2.37
CUX2O14529 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX2O14529 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC29.86■■■□□ 2.37
CUX2O14529 AFG3L1P-217ENST00000557444 2447 ntBASIC29.85■■■□□ 2.37
CUX2O14529 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
CUX2O14529 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
CUX2O14529 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
CUX2O14529 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX2O14529 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 SNCG-201ENST00000348795 684 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX2O14529 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC29.85■■■□□ 2.37
CUX2O14529 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
CUX2O14529 AL590560.3-201ENST00000623350 461 ntBASIC29.85■■■□□ 2.37
CUX2O14529 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CUX2O14529 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC29.85■■■□□ 2.37
CUX2O14529 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX2O14529 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX2O14529 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
CUX2O14529 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX2O14529 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
CUX2O14529 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC29.84■■■□□ 2.37
CUX2O14529 APOC4-201ENST00000591600 348 ntTSL 3 BASIC29.84■■■□□ 2.37
CUX2O14529 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC29.84■■■□□ 2.37
CUX2O14529 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC29.84■■■□□ 2.37
CUX2O14529 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX2O14529 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX2O14529 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC29.84■■■□□ 2.37
CUX2O14529 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC29.84■■■□□ 2.37
CUX2O14529 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
CUX2O14529 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC29.83■■■□□ 2.37
CUX2O14529 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC29.83■■■□□ 2.37
CUX2O14529 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC29.83■■■□□ 2.37
CUX2O14529 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
CUX2O14529 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC29.83■■■□□ 2.37
CUX2O14529 AC132938.2-201ENST00000579188 680 ntBASIC29.83■■■□□ 2.37
CUX2O14529 MIR4259-201ENST00000584466 101 ntBASIC29.83■■■□□ 2.37
CUX2O14529 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
CUX2O14529 AC073592.8-201ENST00000624126 511 ntBASIC29.83■■■□□ 2.37
CUX2O14529 AL591163.1-201ENST00000641757 987 ntBASIC29.83■■■□□ 2.37
CUX2O14529 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC29.83■■■□□ 2.37
CUX2O14529 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
CUX2O14529 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CUX2O14529 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC29.83■■■□□ 2.37
CUX2O14529 AC005082.1-201ENST00000413042 2259 ntBASIC29.82■■■□□ 2.36
CUX2O14529 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CUX2O14529 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC29.82■■■□□ 2.36
CUX2O14529 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
CUX2O14529 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC29.82■■■□□ 2.36
CUX2O14529 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
CUX2O14529 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
CUX2O14529 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC29.82■■■□□ 2.36
CUX2O14529 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC29.82■■■□□ 2.36
CUX2O14529 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms