Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 AL805961.1-202ENST00000641562 540 ntBASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 MIR4745-201ENST00000577608 62 ntBASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC33.35■■■□□ 2.93
SHROOM4Q9ULL8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 AC009949.1-201ENST00000623048 1830 ntBASIC33.34■■■□□ 2.93
SHROOM4Q9ULL8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 AQP6-203ENST00000551733 849 ntTSL 3 BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 AP000997.3-201ENST00000623333 2250 ntBASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 AC009113.1-201ENST00000570267 2443 ntBASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
SHROOM4Q9ULL8 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC33.32■■■□□ 2.93
SHROOM4Q9ULL8 AC023141.5-201ENST00000458585 616 ntBASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
SHROOM4Q9ULL8 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 PMS2P4-201ENST00000412466 1052 ntBASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 AC073592.5-201ENST00000624854 528 ntBASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 AC132938.5-201ENST00000624980 1813 ntBASIC33.31■■■□□ 2.92
SHROOM4Q9ULL8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 NCF1C-201ENST00000438382 1427 ntBASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 BX323043.1-201ENST00000641006 1765 ntBASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 KRT19P2-202ENST00000557173 1012 ntBASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 AC005225.4-201ENST00000557330 545 ntBASIC33.3■■■□□ 2.92
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms