Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIMD1Q9UGP4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 CEND1P1-201ENST00000451006 455 ntBASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 AL513190.1-201ENST00000621254 727 ntBASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 AD001527.2-201ENST00000622994 785 ntBASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMD1Q9UGP4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 VN2R19P-201ENST00000442399 1052 ntBASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 MIR4751-201ENST00000578027 74 ntBASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 AC244517.3-201ENST00000616254 1235 ntBASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 AL589182.2-201ENST00000619332 1049 ntBASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
LIMD1Q9UGP4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 CROCCP3-202ENST00000420820 1947 ntBASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SPDYE21P-201ENST00000413323 827 ntBASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC011467.4-201ENST00000594891 528 ntBASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SIGLEC16-201ENST00000599858 1437 ntBASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 AC006504.4-201ENST00000592118 1568 ntBASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 ELL2P1-201ENST00000413990 1906 ntBASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMD1Q9UGP4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms