Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VSX1Q9NZR4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 AC005104.2-201ENST00000427818 678 ntBASIC15.8■□□□□ 0.12
VSX1Q9NZR4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 VENTXP5-201ENST00000523979 775 ntBASIC15.8■□□□□ 0.12
VSX1Q9NZR4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 AL390719.2-201ENST00000606993 987 ntBASIC15.8■□□□□ 0.12
VSX1Q9NZR4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VSX1Q9NZR4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 LINC01311-201ENST00000565162 1445 ntBASIC15.79■□□□□ 0.12
VSX1Q9NZR4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 AC092647.4-201ENST00000457211 535 ntBASIC15.79■□□□□ 0.12
VSX1Q9NZR4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VSX1Q9NZR4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 CROCCP2-202ENST00000412962 2773 ntBASIC15.78■□□□□ 0.12
VSX1Q9NZR4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 AC096633.1-201ENST00000422446 749 ntBASIC15.78■□□□□ 0.12
VSX1Q9NZR4 AC063952.2-201ENST00000498792 1227 ntBASIC15.78■□□□□ 0.12
VSX1Q9NZR4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VSX1Q9NZR4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms