Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 AC022211.2-201ENST00000585075 2527 ntBASIC18.26■□□□□ 0.51
PCDH9Q9HC56 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 AL121761.2-201ENST00000598007 1648 ntBASIC18.26■□□□□ 0.51
PCDH9Q9HC56 Z83836.1-201ENST00000624605 1642 ntBASIC18.26■□□□□ 0.51
PCDH9Q9HC56 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 PCED1CP-201ENST00000419887 785 ntBASIC18.25■□□□□ 0.51
PCDH9Q9HC56 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AL390719.2-201ENST00000606993 987 ntBASIC18.25■□□□□ 0.51
PCDH9Q9HC56 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AC009154.2-201ENST00000621177 724 ntBASIC18.25■□□□□ 0.51
PCDH9Q9HC56 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AL353692.3-201ENST00000407031 1396 ntBASIC18.25■□□□□ 0.51
PCDH9Q9HC56 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDH9Q9HC56 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 AC011498.5-201ENST00000592027 486 ntBASIC18.24■□□□□ 0.51
PCDH9Q9HC56 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.24■□□□□ 0.51
PCDH9Q9HC56 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDH9Q9HC56 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms